How to use the online tool TIMER

This article introduces you how to use the online tool TIMER, the content is very detailed, interested friends can refer to, hope to be helpful to you.

Function and use of online tool TIMER

TIMER is an online tool for comprehensive analysis of tumor infiltrating immune cells. The abundance of six types of immune infiltrating cells (B cells, CD4+T cells, CD8+T cells, neutrophils, macrophages and dendritic cells) was estimated by TIMER algorithm.

Gene module explores the correlation between gene expression and immune infiltration abundance.

Select the type of cancer, immune cell type, input gene symbol can be analyzed.

The Survival module explores the association between clinical results and immune infiltration or gene expression abundance.

Mutation module explores the relationship between mutant genes and the abundance of immune infiltration

SCNA module explores the relationship between the number of gene copy variants and the abundance of immune infiltration.

Diff Exp module to explore the differential gene expression between tumor and normal tissue

Correlation module explores the correlation between genes

The Estimation module runs the user's private sample through the TIMER algorithm.

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