How to install IsoSeq3
Today, the editor will share with you the relevant knowledge about how to install IsoSeq3. The content is detailed and the logic is clear. I believe most people still know too much about this, so share this article for your reference. I hope you can get something after reading this article. Let's take a look at it.
Refer to the official installation instructions and use Anaconda to install. The steps are as follows:
1 download the latest version of Anaconda
2 refer to the installation instructions to install Anaconda. And add the bin directory of Anaconda to the system PATH environment variable
3 Test whether conda is successfully installed and updated to the latest version
Conda-V conda update conda
4 create a virtual environment named anaCogent5.2 (the name can be defined by yourself), using python version 2.7
Conda create-n anaCogent5.2 python=2.7 anacondasource activate anaCogent5.2
5 configure domestic image to speed up software installation
Sometimes, the installation of these packages is slow and may be interrupted, mainly because the Anaconda server is abroad. It can be replaced with a domestic image to speed up the download speed. At present, an image is provided at Tsinghua University, and its configuration method is as follows:
Conda config-add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/conda config-add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/conda config-add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/conda config-set show_channel_urls yes
6 install the dependency package biopython bx-python
Conda install-n anaCogent5.2 biopythonconda install-n anaCogent5.2-c http://conda.anaconda.org/cgat bx-python
7 install iso-Seq3 and LIMA
Conda install-n anaCogent5.2-c bioconda isoseq3conda install-n anaCogent5.2-c bioconda bamtools conda install-n anaCogent5.2-c bioconda pysam above is all the content of this article "how to install IsoSeq3". Thank you for reading! I believe you will gain a lot after reading this article. The editor will update different knowledge for you every day. If you want to learn more knowledge, please pay attention to the industry information channel.
