How to use LeafcircBase database
This article mainly introduces how to use the LeafcircBase database, the article is very detailed, has a certain reference value, interested friends must read it!
LeafcircBase contains circular RNA information of the following five plant model organisms.
Arabidopsis thaliana
Glycine max
Oryza sativa
Triticum aestivum
Zea mays
Use the following two softwares to predict annular RNA
Find_circ
CircRNA_finder
Through the Browse menu on the official website, you can browse the circular RNA data corresponding to different species.
Taking Arabidopsis thaliana as an example, the results are as follows
Click on the name of the source gene to jump to the corresponding database. Click the Download button in the upper right corner to download all the results, and click Datails to view the details of the ring RNA, as shown below
You can see the corresponding software. If homology exists in other species, information about the homologous circular RNA is also listed, as shown below
Through this database, we can view not only the information of circular RNA in plants, but also the homology among different species.
The results in this database can be downloaded, and in the downloaded excel file, you can also see the number of the sample corresponding to each ring RNA in the SRA database.
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