What is the use of DARNED database
This article is to share with you about the use of DARNED databases. The editor thinks it is very practical, so share it with you as a reference and follow the editor to have a look.
The DARNED database contains RNA editing sites of human and other species. In addition to the most common RNA editing of A-> I type, some RNA editing sites of C-> U are also included in the database.
Https://darned.ucc.ie/
The species contained in the database are as follows
Human
Mouse
Drosophila
The official website provides three search methods.
1. Region-based
Assembly selects the corresponding species, and then selects the RNA editing site information on the corresponding chromosome region according to Chromosome, start and end. Through Limit, you can screen specific gene regions, such as editing site information on exon. The search box is as follows.
2. Gene-based
Gene-based supports direct retrieval of RNA editing site information on a gene. The search box is as follows.
3. Sequence-based
Sequence-based supports entering a sequence directly, first determining the position of the sequence on the gene, and then giving the RNA editing site information of the corresponding interval. The search box is as follows.
Taking the human gene AHR as an example, the search results are as follows
In the search results, information such as the type of each RNA editing site, the location of the chromosome, and whether the corresponding gene, SNP, is located on the Alu repeat sequence is given.
The database is downloaded free of charge and can be downloaded to the RNA editing site information of each species from the following link
Https://darned.ucc.ie/download/
Compared with RADATR database, the number of RNA editing sites included in this database will be less.
Thank you for reading! This is the end of this article on "what's the use of DARNED database?". I hope the above content can be helpful to you, so that you can learn more knowledge. if you think the article is good, you can share it for more people to see!
