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This article mainly introduces "what to do when downloading TCGA data through GDCRNATools". In daily operation, I believe many people have doubts about what to do when downloading TCGA data through GDCRNATools. The editor consulted all kinds of materials and sorted out simple and easy-to-use methods of operation. I hope it will be helpful for you to answer the question of "how to download TCGA data through GDCRNATools". Next, please follow the editor to study!

TCGA data download

The following error occurred while downloading TCGA data through GDCRNATools:

Gdc-client software installation and configuration

Download the software address: https://gdc.cancer.gov/access-data/gdc-data-transfer-tool, download the corresponding version according to your own operating system, download the Mac version here.

Extract the downloaded software and put it in a directory that is easy to find. For example, I put it in the Documents/TCGA data download.

Download data find the data you need, such as HNSC's miRNA data, on GDC's official website: https://portal.gdc.cancer.gov. Then download Manifest to the directory just placed by the software, first click Exploration, then select the desired cancer type and project on the left, and click View Files in Repository after selection.

It then jumps to the Repository page, where you can further filter the data you need. After selecting, click Add All Files to Cart, and then you can see how many files have been added in the cart in the upper right corner. If you don't need to download other data, you can click Manifest and download it to Documents/TCGA data download.

Then open the terminal, type in. / gdc-client download-m gdc_manifest.2020-08-11.txt-d. / HNSC/ and start downloading.

At this point, the study on "what to do wrong in downloading TCGA data through GDCRNATools" is over. I hope to be able to solve your doubts. The collocation of theory and practice can better help you learn, go and try it! If you want to continue to learn more related knowledge, please continue to follow the website, the editor will continue to work hard to bring you more practical articles!

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