Case Analysis of Hi-C data Visualization tool Genome Browser

Today, I will talk to you about the case analysis of Hi-C data visualization tool Genome Browser, which may not be well understood by many people. in order to make you understand better, the editor has summarized the following content for you. I hope you can get something according to this article.

For chip_seq data, we can display and view the corresponding data through UCSC, igvtools and other genome browsers, but for the result information of three-dimensional genomics, these two-dimensional genome browsers can not effectively display. With the development of 3D genomics, there are more and more related visualization software. 3D Genome Browser is one of them. It is an online website for displaying 3D genomics data, which can display the following information.

Hi-C

ChIA-PET

Capture Hi-C

For Hi-C data, you can view the results of published public data sets, or you can show your own data analysis results. Select the displayed data and the corresponding chromatin region by following the steps shown below

The results are as follows

In addition to displaying a single Hi-C data, it also supports importing two-dimensional results such as chip_seq and RNA_seq in UCSC or Epigenome genome browsers. The red box shown in the following figure shows the URL link for the input data

Then click update. Multiple 2D data sets can be displayed at the same time. The result is shown below.

The site also provides a display of Promoter Capture Hi-C data, but only supports public datasets. Select the corresponding dataset by following the steps shown in the figure below.

The results of the display are as follows

After reading the above, do you have any further understanding of the case analysis of Genome Browser, a Hi-C data visualization tool? If you want to know more knowledge or related content, please follow the industry information channel, thank you for your support.