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How does blast batch comment output specify the required column information

Shulou Source: shulou.com Published: 2022-06-01 04:39:17 10月04日 Update

Today, I would like to share with you how blast batch comments output results to specify the required column information related knowledge points, detailed content, clear logic, I believe that most people still know too much about this knowledge, so share this article for your reference, I hope you can get something after reading this article, let's take a look at it.

Blast batch comment output results specify the required column information

Makeblastdb-in PlantTFDB-all_TF_pep.fas-dbtype prot-title PlantTFDB-all_TF_pep.fas# extract the corresponding protein sequence of gene list: python $scriptdir/get_fa_by_id.py-I. / 7.all_enrich/gene.list\-f. / 7.all_enrich/pep.fa-p query# transcription factor blastp annotation blastp-query query.fa-db Ath_pep.fas-max_hsps 1\-num _ alignments 1-evalue 1e-5-num_threads 2\-outfmt "6 qseqid sseqid qlen slen pident length mismatch gapopen qstart qend sstart send evalue bitscore qcovs stitle"\-out tf.blast.out above is all the content of the article "how to batch comment output results for blast to specify the required column information" Thank you for reading! I believe you will gain a lot after reading this article. The editor will update different knowledge for you every day. If you want to learn more knowledge, please pay attention to the industry information channel.

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