What is the use of lncRNome database
Xiaobian to share with you what lncRNome database is used for, I believe most people still do not know how, so share this article for everyone's reference, I hope you have a lot of harvest after reading this article, let's go to understand it together!
Welcome to "Shengxin Practice Manual"!
lncRNome is a comprehensive database of human lncRNAs containing more than 17000 lncRNAs.
http://genome.igib.res.in/lncRNome/
In this database, the following lncRNA information is provided
chromosomal location
gene types
functional description
related diseases
In addition to this, using multiomics analysis, the following two types of information were provided
lncRNA-interacting proteins
SNPs on lncRNA
Methylation sites/histone modification regions on lncRNA
The official website provides a variety of search methods, which can be searched by lncRNA Id, chromosome number, gene type, etc., as follows
Taking HOTAIR as an example, the search results contain the following information
1. basic information
This section contains lncRNA name, type, chromosome location, length, related diseases, literature and other information, as follows
2. sequence and secondary structure
lncRNA sequence from UCSC, secondary structure predicted by RNAfold software, shown as follows
3. Interaction with proteins
4. SNPs in lncRNA region
5. Related apparent modifications
Contains methylation and histone modification information, as shown below
The database is free to download, you can download the following data
The above is "lncRNome database what to use" all the content of this article, thank you for reading! I believe that everyone has a certain understanding, hope to share the content to help everyone, if you still want to learn more knowledge, welcome to pay attention to the industry information channel!
