What is the use of the R language parameter check.names
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R language adds check.names=F parameters to read data such as read.table to ensure that special characters of the data can be read properly:
For example, the data header "-" is considered to be "."
> A=read.table ("F:/test/WGCNA/data/fpkm/All.DEG_final_3000.xls", sep= "\ t", check.names=T,header=T) > head (A 2) ID CK.WT.1 CK.WT.2 CK.WT.3 CK.tdr1.1 CK.tdr1.2 CK.tdr1.3 NaWT.1 NaWT.2 NaWT.31 AT1G01010 3.74149 7.3618 5.81734 5.71131 7.97054 10.37620 6.29949 5.55062 5.847792 AT1G01030 5.23528 2.66859 3.22632 1.32105 1.96726 2.40259 3.23077 4.80378 Natdr1.1 Natdr1.2 Natdr1.3 Na.WT. 1 Na.WT.2 Na.WT.3 Na.tdr1.1 Na.tdr1.2 Na.tdr1.31 15.58810 14.76360 17.74670 9.84943 7.97949 6.841060 13.29120 25.37000 19.599402 2.04301 2.29524 1.95286 1.83377 1.70757 0.809564 3.23172 1.80478 2.06044 SWT.1 SWT.2 SWT.3 Stdr1.1 Stdr1.2 Stdr1.31 4.96687 5.53349 3.18816 6.93650 7.88402 11 .250402 8.49256 2.65564 2.25570 4.35298 4.52147 7.11351 > A=read.table ("F:/test/WGCNA/data/fpkm/All.DEG_final_3000.xls" Sep= "\ t", check.names=F,header=T) > head (A 2) ID CK-WT-1 CK-WT-2 CK-WT-3 CK-tdr1-1 CK-tdr1-2 CK-tdr1-3 NaWT-1 NaWT-2 NaWT-31 AT1G01010 3.74149 7.3618 5.81734 5.71131 7.97054 10.37620 6.29949 5.55062 5.847792 AT1G01030 5.23528 2.66859 3.22632 1.32105 1.96726 2.40259 3.23077 4.80378 Natdr1-1 Natdr1-2 Natdr1-3 Na-WT- 1 Na-WT-2 Na-WT-3 Na-tdr1-1 Na-tdr1-2 Na-tdr1-31 14.76360 17.74670 9.84943 7.97949 6.841060 13.29120 25.37000 19.599402 2.04301 2.29524 1.95286 1.83377 1.70757 0.809564 3.23172 1.80478 2.06044 SWT-1 SWT-2 SWT-3 Stdr1-1 Stdr1-2 Stdr1-31 4.96687 5.53349 3.18816 6.93650 7.88402 11 . 250402 8.49256 2.65564 2.25570 4.35298 4.52147 7.11351
The data.frame () function also has character changes when combining data boxes, so you need to set check.names=F.
Data box:
> A1roomA [ 1:12] > head (A1 CK-tdr1 2) ID CK-WT-1 CK-WT-2 CK-WT-3 CK-tdr1-1 CK-tdr1-2 CK-tdr1-3 NaWT-1 NaWT-2 NaWT-31 AT1G01010 3.74149 7.3618 5.81734 5.71131 7.97054 10.37620 6.29949 5.55062 5.847792 AT1G01030 5.23528 2.66859 3.22632 1.32105 1.96726 2.40259 3.23077 4.80378 Natdr1-1 Natdr1-21 15.58810 14.763602 2.04301 2.29524 > A2roomA [ 13:24] > head Natdr1-3 Na-WT-1 Na-WT-2 Na-WT-3 Na-tdr1-1 Na-tdr1-2 Na-tdr1-3 SWT-1 SWT-2 SWT-31 17.74670 9.84943 7.97949 6.841060 13.29120 25.37000 19.59940 4.96687 5.53349 3.188162 1.95286 1.83377 1.70757 0.809564 3.23172 1.80478 2.06044 8.49256 2.65564 2.25570 Stdr1- 1 Stdr1-21 6.93650 7.884022 4.35298 4.52147
Combination:
> B=data.frame (A1 Magi A2) > head (B) 2) ID CK.WT.1 CK.WT.2 CK.WT.3 CK.tdr1.1 CK.tdr1.2 CK.tdr1.3 NaWT.1 NaWT.2 NaWT.31 AT1G01010 3.74149 7.3618 5.81734 5.71131 7.97054 10.37620 6.29949 5.55062 5.847792 AT1G01030 5.23528 2.66859 3.22632 1.32105 1.96726 2.40259 3.23077 4.80378 Natdr1.1 Natdr1.2 Natdr1.3 Na.WT. 1 Na.WT.2 Na.WT.3 Na.tdr1.1 Na.tdr1.2 Na.tdr1.31 15.58810 14.76360 17.74670 9.84943 7.97949 6.841060 13.29120 25.37000 19.599402 2.04301 2.29524 1.95286 1.83377 1.70757 0.809564 3.23172 1.80478 2.06044 SWT.1 SWT.2 SWT.3 Stdr1.1 Stdr1.21 4.96687 5.53349 3.18816 6.93650 7.884022 8.49256 2 .65564 2.25570 4.35298 4.52147 > B=data.frame (A1 A2check.namespace F) > head (B) 2) ID CK-WT-1 CK-WT-2 CK-WT-3 CK-tdr1-1 CK-tdr1-2 CK-tdr1-3 NaWT-1 NaWT-2 NaWT-31 AT1G01010 3.74149 7.3618 5.81734 5.71131 7.97054 10.37620 6.29949 5.55062 5.847792 AT1G01030 5.23528 2.66859 3.22632 1.32105 1.96726 2.40259 3.23077 4.80378 Natdr1-1 Natdr1-2 Natdr1-3 Na-WT- 1 Na-WT-2 Na-WT-3 Na-tdr1-1 Na-tdr1-2 Na-tdr1-31 15.58810 17.74670 9.84943 7.97949 6.841060 13.29120 25.37000 19.599402 2.04301 2.29524 1.95286 1.83377 1.70757 0.809564 3.23172 1.80478 2.06044 SWT-1 SWT-2 SWT-3 Stdr1-1 Stdr1-21 4.96687 5.53349 3.18816 6.93650 7.884022 8.49256 2 65564 2.25570 4.35298 4.52147 "what is the use of the parameter check.names of R language" here? Thank you for your reading. If you want to know more about the industry, you can follow the website, the editor will output more high-quality practical articles for you!
